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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs11426515 chr1:224635958 A/AC 0.000109 192 13.58 13.37 5.25 KM Plot
LIHC rs114938073 chr2:201894019 A/G 0.00047 192 13.58 13.03 11.97 KM Plot
LIHC rs11534587 chr11:73654735 G/A 1.36E-5 191 13.53 13.17 1.87 KM Plot
LIHC rs11540855 chr19:17403361 A/G 0.000468 181 13.35 14.18 2.23 KM Plot
LIHC rs11541642 chr15:40683702 A/G 0.000401 190 13.35 11.13 2.23 KM Plot
LIHC rs11576835 chr1:224587934 C/T 0.000457 190 13.15 13.87 2.17 KM Plot
LIHC rs11577183 chr1:224587772 A/G 0.000457 190 13.15 13.87 2.17 KM Plot
LIHC rs11584638 chr1:224627117 A/G 0.000489 192 13.35 13.87 2.17 KM Plot
LIHC rs11588973 chr1:224650368 G/C 9.32E-5 191 13.55 13.83 5.25 KM Plot
LIHC rs116003223 chr17:78332823 C/T 1.05E-5 187 13.73 15.07 3.37 KM Plot
LIHC rs116064696 chr11:117967958 C/T 1.07E-5 192 13.67 3.4 0 KM Plot
LIHC rs11609628 chr12:112217208 G/A 0.00036 191 12.1 14.9 5.17 KM Plot
LIHC rs11613713 chr12:112217138 C/T 0.00036 191 12.1 14.9 5.17 KM Plot
LIHC rs11620307 chr13:46649721 G/A 9.99E-5 191 13.53 13.92 10 KM Plot
LIHC rs11620308 chr13:46649723 G/A 9.99E-5 191 13.53 13.92 10 KM Plot